复发性室管膜瘤的DNA甲基化和转录组格局。10例复发室管膜瘤的手术、放化疗及致瘤性资料的时间过程总结。插入原发(p)或复发(r) PFA和RELA肿瘤(圆形括号中为模型ID)的小脑内(ICb)和脑内(IC)原位异种移植瘤形成图像,以显示肿瘤(T)、脑积水(*)和脑脊液扩散。B复发性PFA epn小鼠原位移植模型。在大体(上图)的小鼠大脑(轮廓)上可以看到肿瘤形成。H&E染色(中)显示原发患者肿瘤与PDOX肿瘤的组织学比较。显示了小脑内(ICb) PDOX模型从第I (I)代到第V (V)代连续体内移植过程中动物存活时间(下面板)的变化,以及植入不同细胞数量(从每只小鼠1000个细胞到10万个细胞)对两种PDOX模型动物生存时间的影响(n = 10只小鼠/组)。比例尺= 50µM。C热图显示所有EPN肿瘤样本中最高变量20,000 CpGs的DNA甲基化比率。患者ID被垂直标记在热图的顶部。 The black and gray bars under the patient IDs are used to separate tumors from the same patient. D Phylogeny tree construction using the top 6000 CpGs with variable DNA methylation ratios in RELA (red circle) and PFA (blue circle) tumors. E Principle component analysis of RNA-seq data from EPN tumor samples using age matched childhood normal brain tissues as references. F Heatmap representing the PFA (left) and RELA (right) primary tumor signature genes' expression levels in all samples, including multiple relapses. The primary signature genes were selected from a previously published database GSE64415, and those overlapped with our consistently decreased (green) and increased (red) genes were highlighted. G CA methylation ratios in PFA (left) and RELA (lower) primary and recurrent tumors as compared with normal childhood cerebellar and cerebral tissues. Boxplots indicate median, first and third quartiles (Q1 and Q3), whiskers extend to the furthest values; the uppermost and lowest line indicates the maximum and minimum values, respectively. Marked on the top of each boxplot is the number of samples analyzed including Cerebellum (n = 2); Cerebrum (n = 3); PFA-P (n = 2); PFA-R1 (n = 5); PFA-R2 (n = 3); PFA-R3 (n = 1); PFA-R4 (n = 1); RELA-P (n = 3); RELA-R1 (n = 4); RELA-R2 (n = 2); RELA-R3 (n = 2); RELA-R4 (n = 2); RELA-lateR (n = 2). Credit:自然通讯(2022)。DOI: 10.1038 / s41467 - 022 - 34514 - z